Human iPS Cell Line (Amyotrophic Lateral Sclerosis)
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Human iPS Cell Lines (iPSCs) derived from Amyotrophic Lateral Sclerosis (ALS) patients are generated by reprogramming somatic cells, such as dermal fibroblasts or peripheral blood mononuclear cells, obtained from individuals diagnosed with ALS. These cell lines retain the specific genetic background and disease-associated mutations (e.g., in SOD1, C9orf72, TARDBP, or FUS) of the donor. Characterized by standard pluripotency markers (e.g., OCT4, NANOG, SOX2, SSEA-4) and a normal karyotype, they exhibit indefinite self-renewal and the capacity to differentiate into all three germ layers.
In culture, they grow as adherent, tightly packed colonies with a high nuclear-to-cytoplasmic ratio, typically maintained in a nutrient-supplemented basal medium under standard conditions (37°C, 5% CO₂). Their primary value lies in disease modeling; they can be directed to differentiate into motor neurons and glial cells, allowing researchers to study ALS pathogenesis, protein aggregation, and neural degeneration in a patient-specific human context. Consequently, they are widely used for high-throughput drug screening and the development of targeted therapies for this fatal neurodegenerative disorder.
ATAC-Seq Data were Generated for 533 iPSC-Derived Motor Neuron Lines
To investigate the epigenetic basis of sporadic ALS, Tsitkov et al. performed ATAC-seq on iPSC-derived motor neurons from 380 patients and 80 controls. ATAC-seq was conducted on 533 motor neuron lines from 460 donors, with variation controlled using batch differentiation controls (BDCs) and technical controls (BTCs) (Fig. 1a, b). All samples met ENCODE alignment quality standards. The consensus peak set comprised 100,363 regions, predominantly intronic/intergenic (80%) or promoter/5'UTR (10%) (Fig. 1c). Validation confirmed accessibility of motor neuron-specific genes (e.g., LHX3, ISL1) and silencing of the pluripotency marker POU5F1 (Fig. 1d), with high data reproducibility confirmed by inter-sample correlations.

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