Cell and Tissue Fixation

To ensure that the antibody is free access to its antigen, the cells must be fixed and permeabilized. In general, fixation strengths and times for cells are much shorter than those of thicker, structurally complex tissue sections. For immunocytochemistry, sample preparation is primarily to fix the target cells to the glass slides. Perfect fixation would immobilize the antigens, while retaining authentic cellular and subcellular structure and allowing unhindered access of antibodies to all cells and subcellular compartments.

The fixation methods are generally classified into two classes of organic solvents and cross-linking reagents. Organic solvents, such as alcohols and acetone, remove lipids and dehydrate the cells, while precipitating proteins on the cellular structures. Cross-linking reagents, such as paraformaldehyde, typically form intermolecular bridges through free amino groups to create a network of linked antigens. Cross-linking reagents protect cell structure better than organic solvents, but may reduce the antigenicity of certain cell components and require an additional permeabilization step to allow access of the antibody to the specimen. Fixation with both methods can denature protein antigens, and for this reason, antibodies prepared against denatured proteins may be more useful for cell staining.

Different fixation methods are described here. Each method has advantages and disadvantages, and the choice of which method depends on the nature of the antigen being examined and on the properties of the antibody used.

Table 1. Detailed fixation and permeabilization methods for cell culture samples.

Acetone fixation
  • Fix cells in -20°C acetone for 5-10 minutes.
  • No permeabilization step is needed following acetone fixation.
Methanol fixation
  • Fix cells in -20°C methanol for 5-10 minutes.
  • No permeabilization step is needed following methanol fixation.
Ethanol fixation
  • Fix cells in cooled 95% ethanol, 5% glacial acetic acid for 5-10 minutes.
Methanol-acetone fixation
  • Fix cells in cooled methanol for 10 minutes at -20°C.
  • Remove excess methanol.
  • Permeabilize with cooled acetone for 1 minute at -20°C.
Methanol-acetone mix fixation
  • Prepare 1:1 methanol and acetone mixture
  • Make the mixture fresh and fix cells at -20°C for 5-10 minutes.
Methanol-ethanol mix fixation
  • Prepare 1:1 methanol and ethanol mixture
  • Make the mixture fresh and fix cells at -20°C for 5-10 minutes.
Formalin fixation
  • Fix cells in 10% neutral buffered formalin for 5-10 minutes.
  • Rinse briefly with PBS.
  • Permeabilize with 0.5% Triton X-100 for 10 minutes.
Paraformaldehyde-triton fixation
  • Fix cells in 3-4% paraformaldehyde for 10-20 minutes.
  • Rinse briefly with PBS.
  • Permeabilize with 0.5% Triton X-100 for 10 minutes.
Paraformaldehyde-methanol fixation
  • Fix cells in 4% paraformaldehyde for 10-20 minutes.
  • Rinse briefly with PBS.
  • Permeabilize with cooled methanol for 5-10 minutes at -20°C.


Table 2. Fixation and permeabilization methods for tissue samples.

Immersion fixation
  • 10% neutral buffered formalin (NBF) is the most commonly used.
  • The ideal fixation time will depend upon the dimensions and the types of the samples.
Perfusion fixation
  • 2% glutaraldehyde and 2% paraformaldehyde in 0.1M buffer.
  • The conditions depend upon the animal, its age and the organ required.

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